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Latest Module Specifications

Current Academic Year 2025 - 2026

Module Title Proteins, Proteomics & Biopharma
Module Code BTE1015 (ITS: BE402)
Faculty Biotechnology School Science & Health
NFQ level 8 Credit Rating 5
Description

To explain key techniques for protein purification and analysis. To illustrate DNA recombinant technology’s role in protein and peptide production and purification. To understand methods in protein engineering, such as directed evolution and rational design. To understand the strengths and weaknesses of these methods. To understand methods for selecting protein engineering targets. To review these strategies in specific examples of industrial enzymes and biotherapeutics to improve performance and processes. To review recent developments in biopharmacology and next generation biotherapeutic modalities. To discuss various technologies used in proteomic applications. To provide an overview of analytical tools, such as mass spectrometry, for the quality assessment of biotherapeutics.

Learning Outcomes

1. Discuss the applications of bulk enzymes in key industrial processes (e.g. detergents, starch processing).
2. Describe examples of the improvement of key proteins by protein engineering strategies.
3. Outline the scope and potential of biosensor technologies.
4. Outline the applications of DNA recombinant technology to the production and purification of proteins and monoclonal antibodies.
5. Provide an overview of proteomics and protein mass spectrometry analysis.
6. To describe developments in biopharmacology and next generation biotherapeutic modalities.


WorkloadFull time hours per semester
TypeHoursDescription
Lecture24No Description
Independent Study101No Description
Total Workload: 125
Section Breakdown
CRN10153Part of TermSemester 1
Coursework0%Examination Weight0%
Grade Scale40PASSPass Both ElementsY
Resit CategoryRC3Best MarkN
Module Co-ordinatorFinbarr O'SullivanModule TeacherDenise Harold, Linda Holland, Paul Cahill, Paula Meleady
Assessment Breakdown
TypeDescription% of totalAssessment Date
In Class TestMaterial from weeks 1-610%Other
In Class TestAssessment of material from weeks 7-1210%Other
Formal Examinationn/a80%End-of-Semester
Reassessment Requirement Type
Resit arrangements are explained by the following categories;
RC1: A resit is available for both* components of the module.
RC2: No resit is available for a 100% coursework module.
RC3: No resit is available for the coursework component where there is a coursework and summative examination element.

* ‘Both’ is used in the context of the module having a coursework/summative examination split; where the module is 100% coursework, there will also be a resit of the assessment

Pre-requisite None
Co-requisite None
Compatibles None
Incompatibles None

All module information is indicative and subject to change. For further information,students are advised to refer to the University's Marks and Standards and Programme Specific Regulations at: http://www.dcu.ie/registry/examinations/index.shtml

Indicative Content and Learning Activities

PROTEIN ENGINEERING TECHNIQUES
Introduction to protein engineering and its importance to improving protein function for industrial processes and biotherapeutics. Overview of techniques used in protein engineering e.g. site directed mutagenesis, chemical modification, etc.

SCREENING TECHNOLOGIES
Introduction to general screening platforms, as well as specific techniques such as phage display, etc.

CASE STUDIES OF PROTEIN ENGINEERING
Examples in improvement via protein engineering of enzymes and biotherapeutics, e.g. Subtilisin, Erythropoietin (EPO), Insulin, and bispecific antibodies.

PROTEIN PRODUCTION AND PURIFICATION
The use of recombinant DNA technology for optimal protein production. Affinity purification of recombinant fusion proteins (e.g. His-tag, Thioredoxin fusions), recombinant proteins (e.g. IMAC) and monoclonal antibodies therapeutics (e.g. Protein A/G, cation or anion exchange chromatography, lectin AC, etc.)

PROTEOMICS
An overview of proteomic analysis, practical methodologies and applications, e.g. 2D-PAGE and LC-MS for protein identification and characterisation (e.g. post translational modifications)

BIOPHARMA AND RECOMBINANT PROTEINS
Introduction to Biopharmacology and the importance of protein glycosylation. Overview of some important biotherapeutics for disease treatment. Overview of next generation biotherapeutic modalities (e.g. bi-specific antibodies, antibody drug conjugates, nanobodies, etc.).

Indicative Reading List

Books:
None

Articles:
  • Zainab Noor, Seong Beom Ahn, Mark S. Baker, Shoba Ranganathan and Abidali Mohamedali: 2020, Mass spectrometry–based protein identification in proteomics—a review, Bioinformatics, 00(00), 119, doi: 10.1093/bib/bbz163,
Other Resources

None

<< Back to Module List View 2024/25 Module Record for BE402