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Module Specifications

Archived Version 2017 - 2018

Module Title Biomolecules and Metabolism
Module Code BE201
School School of Biotechnology

Online Module Resources

Module Co-ordinatorDr Phil CumminsOffice NumberX220
NFQ level 8 Credit Rating 5
Pre-requisite None
Co-requisite None
Compatibles None
Incompatibles None
Description

To give a basic understanding of the structures, properties and functions of the main types of biological macromolecules: proteins (including enzymes), carbohydrates and lipids. To outline the main pathways of metabolism in the cell: catabolic (breakdown) reactions yielding energy and anabolic (biosynthetic) reactions leading to new structures within the cell.

Learning Outcomes

1. Recall the basic structures and functions of the main macromolecule classes (carbohydrates, proteins & lipids)
2. Recall the basic principles of cellular energy (i.e. ATP, NAD+) and metabolic pathways
3. Discuss lucidly the structural properties of macromolecules, including the four (4) levels of protein structural organization
4. Discuss macromolecule function and regulation within the context of human health and disease (e.g. hemoglobin versus myoglobin)
5. Outline the basic principles of enzyme catalysis and reaction kinetics
6. Describe in detail a number of pivotal catabolic and anabolic pathways (e.g. glycolysis, TCA cycle, fatty acid metabolism etc.)



Workload Full-time hours per semester
Type Hours Description
Lecture12Biological macromolecules (structure, function, properties)
Lecture12Cellular metabolism (catabolic and anabolic pathways)
Tutorial12Lecture revision exercises
Independent Study89Personal study and course revision
Total Workload: 125

All module information is indicative and subject to change. For further information,students are advised to refer to the University's Marks and Standards and Programme Specific Regulations at: http://www.dcu.ie/registry/examinations/index.shtml

Indicative Content and Learning Activities

Proteins
Introduction, amino acid structures and properties, R-groups, ionizations. Protein structural heirarchy, importance of tertiary/ quaternary structures. Introduction to protein sequencing, sequence similarities and phylogenetic relationships. Properties of fibrous proteins, keratins, collagen and elastin. Properties of globular proteins, myoglobin and haemoglobin. Molecular basis of sickle cell anaemia.

Carbohydrates
Monosaccharides, disaccharides, homo- and hetero-polymers. Oligosaccharides as cellular markers, antigens, lectins. Glycoproteins.

Lipids
Fatty acids, glycerides, phospholipids, sphingolipids, steroids, cholesterol. Plasma lipoproteins, role in disease.

Enzymes
Function and measurement of activity, kinetics and plots, multi-substrate reactions. Serine and metallo proteases, active sites and reaction mechanisms. Enzyme inhibition in vitro, regulation of enzyme activity in vivo. Enzymes as analytical tools.

Metabolism
Introduction, bioenergetics, structure and function of ATP and NADPH/ NADH. Glycolysis: preparatory, energy-yielding and regulatory reactions and enzymes. Citric acid (TCA) cycle: overview, complete reactions and regulation; pentose phosphate pathway. Electron transport chain and oxidative phosphorylation. Fatty acid catabolism, transport, oxidation reactions and regulation. Oxidation, fates and biosynthesis of fatty acids. Amino acid metabolism, fates of R- and amino groups; the urea cycle. Reactions and regulation of gluconeogenesis, glycogen synthesis. Lipid biosynthesis, fatty acid synthase complex, regulation. Amino acid biosynthesis and regulation, nitrogen balance and protein turnover.

Assessment Breakdown
Continuous Assessment20% Examination Weight80%
Course Work Breakdown
TypeDescription% of totalAssessment Date
Reassessment Requirement
Resit arrangements are explained by the following categories;
1 = A resit is available for all components of the module
2 = No resit is available for 100% continuous assessment module
3 = No resit is available for the continuous assessment component
Unavailable
Indicative Reading List

  • C.K. Mathews, K.E. van Holde, T.J. Ahern: 2009, Biochemistry, 3rd Edition, Addison Wesley Longman,
Other Resources

None
Programme or List of Programmes
ACBSc in Chemical and Pharmaceutical Sc.
ASBSc in Analytical Science
BSSAStudy Abroad (DCU Business School)
BSSAOStudy Abroad (DCU Business School)
BTBSc in Biotechnology
ECSAStudy Abroad (Engineering & Computing)
ECSAOStudy Abroad (Engineering & Computing)
ESHBSc Environmental Science & Health
GCBBSc in Genetics & Cell Biology
HMSAStudy Abroad (Humanities & Soc Science)
HMSAOStudy Abroad (Humanities & Soc Science)
SAMPBSTAND ALONE MODULE (BIOTECHNOLOGY)
SHSAStudy Abroad (Science & Health)
SHSAOStudy Abroad (Science & Health)
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